BluGen - the Blumeria Sequencing Project

tRNAscan-SE predictions

Codon: AAA

No predictions for this codon

Codon: AAC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Val	contig_000355	1344	1418	-	62.27	Open
tRNA-Val	contig_000566	31967	32040	-	60.58	Open
tRNA-Pseudo	contig_001347	29132	29193	+	30.44	Open
tRNA-Val	contig_001351	26638	26711	-	60.58	Open
tRNA-Val	contig_001547	27323	27397	-	62.27	Open
tRNA-Val	contig_001548	2339	2413	+	62.27	Open
tRNA-Val	contig_001821	29455	29528	+	55.38	Open
tRNA-Val	contig_002176	10569	10642	+	56.28	Open
tRNA-Val	contig_002314	10617	10690	+	63.31	Open
tRNA-Val	contig_002559	25303	25376	+	60.45	Open
tRNA-Val	contig_004647	33382	33456	+	54.62	Open
tRNA-Val	contig_005672	24137	24210	+	60.58	Open
tRNA-Val	contig_006911	5499	5572	-	60.45	Open
tRNA-Val	contig_007446	23973	24046	+	60.58	Open
tRNA-Val	contig_007619	13195	13268	+	60.58	Open
tRNA-Val	contig_007621	6334	6407	+	60.58	Open

Codon: AAG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Leu	contig_000962	3116	3213	+	51.20	Open
tRNA-Leu	contig_001351	11076	11173	+	51.20	Open
tRNA-Leu	contig_002084	22312	22409	+	50.75	Open
tRNA-Leu	contig_003264	9820	9913	+	53.50	Open
tRNA-Leu	contig_003783	7785	7881	+	52.44	Open
tRNA-Leu	contig_003974	25008	25101	-	51.46	Open
tRNA-Leu	contig_004344	3450	3541	+	51.75	Open
tRNA-Leu	contig_004990	11431	11528	+	50.84	Open
tRNA-Leu	contig_005303	13093	13189	-	52.44	Open
tRNA-Leu	contig_005390	12351	12445	-	50.28	Open
tRNA-Leu	contig_005658	679	776	+	50.24	Open
tRNA-Leu	contig_005660	48751	48848	+	51.85	Open

Codon: AAT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ile	contig_000555	2408	2481	+	69.24	Open
tRNA-Ile	contig_001413	2702	2775	+	69.24	Open
tRNA-Ile	contig_001671	14067	14140	+	69.24	Open
tRNA-Ile	contig_001671	21129	21202	-	69.24	Open
tRNA-Ile	contig_001825	9971	10044	+	69.24	Open
tRNA-Ile	contig_002761	9341	9414	-	69.24	Open
tRNA-Ile	contig_003403	24553	24626	+	69.24	Open
tRNA-Ile	contig_003843	14044	14117	+	68.34	Open
tRNA-Ile	contig_004882	25581	25654	-	69.24	Open
tRNA-Ile	contig_005097	6775	6848	-	69.24	Open
tRNA-Ile	contig_005355	5361	5434	+	69.24	Open
tRNA-Ile	contig_006638	18994	19067	+	58.03	Open
tRNA-Ile	contig_009204	1750	1823	+	69.24	Open
tRNA-Ile	contig_014039	437	510	+	67.73	Open

Codon: ACA

No predictions for this codon

Codon: ACC

No predictions for this codon

Codon: ACG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Arg	contig_000107	27775	27846	+	60.35	Open
tRNA-Arg	contig_000442	865	936	+	59.31	Open
tRNA-Arg	contig_001658	5162	5233	+	60.35	Open
tRNA-Arg	contig_003339	18475	18546	-	60.35	Open
tRNA-Arg	contig_003847	64317	64388	-	60.35	Open
tRNA-Arg	contig_003988	22089	22160	-	60.35	Open
tRNA-Arg	contig_004741	25142	25213	-	60.35	Open
tRNA-Arg	contig_004882	58528	58599	-	60.35	Open
tRNA-Arg	contig_004919	40021	40092	-	60.35	Open
tRNA-Arg	contig_005689	15699	15770	+	60.35	Open

Codon: ACT

No predictions for this codon

Codon: AGA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ser	contig_000446	1606	1700	-	49.65	Open
tRNA-Ser	contig_001543	10486	10577	+	51.21	Open
tRNA-Ser	contig_002716	33704	33797	+	48.73	Open
tRNA-Ser	contig_002717	690	783	-	48.73	Open
tRNA-Ser	contig_003552	4969	5059	+	52.76	Open
tRNA-Ser	contig_004311	940	1035	-	48.64	Open
tRNA-Ser	contig_004315	11643	11738	+	49.74	Open
tRNA-Ser	contig_005343	32081	32175	-	50.52	Open
tRNA-Ser	contig_005343	5145	5236	-	48.74	Open
tRNA-Ser	contig_007393	3576	3670	-	47.86	Open
tRNA-Ser	contig_007526	2299	2389	+	50.47	Open

Codon: AGC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ala	contig_000424	22499	22577	-	56.82	Open
tRNA-Ala	contig_000622	2835	2914	+	54.31	Open
tRNA-Ala	contig_001105	40693	40772	-	55.90	Open
tRNA-Ala	contig_002297	15986	16065	-	58.25	Open
tRNA-Ala	contig_002786	16696	16776	+	56.79	Open
tRNA-Ala	contig_003430	31174	31255	-	56.74	Open
tRNA-Ala	contig_003435	369	450	+	56.74	Open
tRNA-Ala	contig_004219	14724	14803	+	56.87	Open
tRNA-Ala	contig_004628	35116	35195	+	56.55	Open
tRNA-Ala	contig_004631	9285	9365	+	56.28	Open
tRNA-Ala	contig_005088	42012	42092	+	49.19	Open
tRNA-Ala	contig_005088	56218	56299	-	55.86	Open
tRNA-Ala	contig_005137	5312	5392	-	56.87	Open
tRNA-Pseudo	contig_013557	415	483	-	27.59	Open

Codon: AGG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Pseudo	contig_000118	4361	4448	+	41.18	Open
tRNA-Pseudo	contig_001099	9115	9202	+	42.39	Open
tRNA-Pseudo	contig_001105	7465	7552	+	41.94	Open
tRNA-Pro	contig_002567	6221	6307	-	47.98	Open
tRNA-Pro	contig_003017	1938	2026	-	46.41	Open
tRNA-Pro	contig_003101	14926	15013	-	43.16	Open
tRNA-Pro	contig_005702	20724	20813	-	43.65	Open
tRNA-Pseudo	contig_006749	18338	18427	+	41.87	Open
tRNA-Pseudo	contig_007516	8645	8734	+	42.01	Open

Codon: AGT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Thr	contig_001266	6302	6384	+	62.59	Open
tRNA-Thr	contig_002607	48307	48387	-	62.57	Open
tRNA-Thr	contig_003019	57394	57476	-	62.45	Open
tRNA-Thr	contig_003479	1361	1441	-	65.42	Open
tRNA-Thr	contig_003481	2335	2415	+	63.91	Open
tRNA-Thr	contig_003975	12224	12301	-	62.66	Open
tRNA-Thr	contig_005114	2524	2604	-	61.83	Open
tRNA-Thr	contig_005162	8483	8559	-	62.34	Open
tRNA-Thr	contig_005170	82929	83009	+	65.10	Open
tRNA-Thr	contig_005358	2340	2417	+	62.66	Open
tRNA-Thr	contig_006402	65870	65950	+	54.64	Open
tRNA-Thr	contig_007574	34581	34660	+	62.25	Open

Codon: ATA

No predictions for this codon

Codon: ATC

No predictions for this codon

Codon: ATG

No predictions for this codon

Codon: ATT

No predictions for this codon

Codon: CAA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Leu	contig_000436	6242	6348	-	49.61	Open
tRNA-Leu	contig_000440	50513	50622	+	48.13	Open
tRNA-Leu	contig_003098	33439	33550	+	39.80	Open
tRNA-Leu	contig_006617	29622	29729	-	47.94	Open
tRNA-Leu	contig_007446	64417	64523	-	51.04	Open

Codon: CAC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Val	contig_001364	18279	18364	+	50.44	Open
tRNA-Val	contig_002563	7385	7468	-	56.16	Open
tRNA-Val	contig_003019	102431	102509	+	54.23	Open
tRNA-Val	contig_003661	2532	2616	+	52.93	Open

Codon: CAG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Leu	contig_000765	780	869	+	45.84	Open
tRNA-Leu	contig_001858	5613	5700	-	47.71	Open
tRNA-Leu	contig_005072	18488	18579	-	43.54	Open

Codon: CAT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Met	contig_000029	1738	1848	-	65.11	Open
tRNA-Met	contig_000085	2	73	+	68.31	Open
tRNA-Met	contig_000089	17438	17545	-	63.96	Open
tRNA-Met	contig_003404	29710	29781	+	68.31	Open
tRNA-Met	contig_003643	591	702	-	64.45	Open
tRNA-Met	contig_003977	14423	14494	+	68.31	Open
tRNA-Met	contig_003977	143556	143627	-	68.31	Open
tRNA-Met	contig_004287	2623	2694	+	68.31	Open
tRNA-Met	contig_004293	20606	20677	+	68.31	Open
tRNA-Met	contig_004307	3752	3823	+	68.31	Open
tRNA-Met	contig_005133	10384	10455	+	67.80	Open
tRNA-Met	contig_005397	3339	3448	+	65.70	Open
tRNA-Met	contig_005466	566	637	+	68.31	Open
tRNA-Met	contig_005860	31256	31366	+	51.06	Open
tRNA-Met	contig_005860	10103	10213	-	64.83	Open
tRNA-Met	contig_006849	7449	7560	+	65.04	Open
tRNA-Met	contig_006891	9999	10070	+	68.31	Open
tRNA-Met	contig_007218	2311	2418	-	59.64	Open
tRNA-Met	contig_007776	2154	2225	-	68.31	Open
tRNA-Met	contig_007802	3375	3446	-	68.31	Open
tRNA-Met	contig_008573	6510	6621	+	65.04	Open
tRNA-Met	contig_008610	2834	2905	+	68.31	Open
tRNA-Met	contig_009808	119	190	-	68.31	Open
tRNA-Met	contig_010723	828	899	+	68.31	Open
tRNA-Met	contig_014751	839	910	-	68.31	Open

Codon: CCA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Trp	contig_000245	331	402	+	59.47	Open
tRNA-Trp	contig_001187	54	125	-	59.47	Open
tRNA-Trp	contig_001295	8228	8299	+	59.47	Open
tRNA-Trp	contig_002717	5466	5537	-	59.47	Open
tRNA-Trp	contig_003770	1636	1707	+	59.47	Open
tRNA-Trp	contig_003784	68166	68237	+	59.47	Open
tRNA-Trp	contig_005306	9765	9836	+	57.03	Open
tRNA-Pseudo	contig_012870	1	65	-	34.05	Open

Codon: CCC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Gly	contig_001189	10543	10622	+	47.38	Open
tRNA-Gly	contig_001597	15981	16060	+	47.46	Open
tRNA-Gly	contig_002081	6480	6558	-	42.14	Open
tRNA-Gly	contig_003442	19633	19711	+	46.32	Open
tRNA-Gly	contig_004010	9479	9562	-	41.55	Open

Codon: CCG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Arg	contig_000707	8704	8799	-	50.60	Open
tRNA-Arg	contig_003973	10021	10118	-	47.87	Open
tRNA-Arg	contig_004015	20579	20673	-	49.40	Open

Codon: CCT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Arg	contig_000062	13694	13773	-	46.37	Open
tRNA-Arg	contig_000451	4891	4971	+	45.59	Open
tRNA-Arg	contig_007332	1303	1385	-	45.83	Open

Codon: CGA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ser	contig_001676	37981	38069	-	57.02	Open
tRNA-Ser	contig_005186	32919	33007	-	55.98	Open
tRNA-Ser	contig_005475	1832	1923	-	61.19	Open
tRNA-Ser	contig_007129	56927	57014	-	58.17	Open

Codon: CGC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ala	contig_001668	6932	7015	+	50.05	Open
tRNA-Ala	contig_001675	21698	21781	+	51.03	Open
tRNA-Ala	contig_003576	12600	12690	-	53.26	Open
tRNA-Ala	contig_004912	1095	1178	+	52.70	Open
tRNA-Ala	contig_005682	1806	1889	+	44.80	Open
tRNA-Ala	contig_006386	73	157	-	47.09	Open

Codon: CGG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Pro	contig_001306	6538	6637	+	43.08	Open
tRNA-Pro	contig_001522	5365	5466	-	38.25	Open
tRNA-Pro	contig_003856	4918	5023	+	38.68	Open

Codon: CGT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Thr	contig_000428	19716	19794	-	59.27	Open
tRNA-Thr	contig_003304	4995	5073	+	57.77	Open
tRNA-Thr	contig_003789	8738	8820	+	58.74	Open
tRNA-Thr	contig_005377	2308	2390	-	57.63	Open

Codon: CTA

No predictions for this codon

Codon: CTC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Pseudo	contig_000449	49263	49341	-	36.26	Open
tRNA-Pseudo	contig_000512	2493	2570	+	36.02	Open
tRNA-Pseudo	contig_001080	36190	36266	-	35.28	Open
tRNA-Pseudo	contig_001436	15487	15563	+	35.28	Open
tRNA-Pseudo	contig_003475	13615	13693	-	36.12	Open
tRNA-Pseudo	contig_003567	29665	29743	+	35.61	Open
tRNA-Pseudo	contig_004212	6121	6197	+	35.50	Open
tRNA-Pseudo	contig_004556	20360	20440	+	36.96	Open
tRNA-Pseudo	contig_004628	36527	36605	-	36.85	Open
tRNA-Pseudo	contig_006449	17108	17185	-	36.02	Open

Codon: CTG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Gln	contig_002074	4878	4958	+	33.21	Open
tRNA-Gln	contig_003229	17305	17385	+	47.13	Open
tRNA-Gln	contig_004468	1775	1857	+	48.81	Open
tRNA-Gln	contig_004591	6598	6678	+	48.32	Open
tRNA-Gln	contig_005087	14661	14744	-	48.95	Open
tRNA-Gln	contig_005396	28731	28813	-	42.27	Open
tRNA-Gln	contig_006122	3868	3950	-	47.85	Open
tRNA-Gln	contig_006993	9174	9256	+	48.04	Open
tRNA-Gln	contig_013411	602	682	+	33.66	Open

Codon: CTT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Lys	contig_001052	64475	64553	+	61.76	Open
tRNA-Lys	contig_001261	3476	3558	-	62.64	Open
tRNA-Lys	contig_002743	11540	11620	-	61.35	Open
tRNA-Lys	contig_003905	40843	40922	-	61.20	Open
tRNA-Lys	contig_004679	700	786	-	61.22	Open
tRNA-Lys	contig_004986	850	936	-	62.14	Open
tRNA-Lys	contig_005087	12681	12775	+	59.34	Open
tRNA-Lys	contig_005390	16897	16987	-	60.64	Open
tRNA-Lys	contig_005391	16645	16735	+	60.64	Open
tRNA-Lys	contig_006565	16538	16617	-	61.71	Open
tRNA-Lys	contig_007162	12403	12481	-	61.76	Open
tRNA-Lys	contig_007187	9958	10052	-	58.57	Open

Codon: GAA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Phe	contig_000331	672	761	-	53.01	Open
tRNA-Phe	contig_000339	28618	28708	+	54.11	Open
tRNA-Phe	contig_000339	41722	41812	-	53.61	Open
tRNA-Phe	contig_000339	35769	35859	-	54.49	Open
tRNA-Phe	contig_001052	66627	66714	+	54.04	Open
tRNA-Phe	contig_001386	5085	5174	-	56.08	Open
tRNA-Phe	contig_001526	4504	4592	+	54.39	Open
tRNA-Phe	contig_001658	3292	3380	+	54.76	Open
tRNA-Phe	contig_002388	2125	2210	+	53.60	Open
tRNA-Phe	contig_002832	4734	4823	+	54.00	Open
tRNA-Phe	contig_004479	4530	4622	+	55.25	Open
tRNA-Phe	contig_004629	13389	13477	-	27.16	Open
tRNA-Phe	contig_005837	12923	13011	+	47.51	Open
tRNA-Phe	contig_005872	28228	28315	+	55.46	Open
tRNA-Phe	contig_007226	2260	2351	-	54.73	Open
tRNA-Phe	contig_009834	654	743	+	54.60	Open
tRNA-Phe	contig_012068	599	688	-	54.60	Open

Codon: GAC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Val	contig_007631	1042	1115	-	62.56	Open

Codon: GAG

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Pseudo	contig_005672	22897	22966	+	20.32	Open

Codon: GAT

No predictions for this codon

Codon: GCA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Cys	contig_001113	13253	13336	+	57.63	Open
tRNA-Cys	contig_001984	10721	10802	+	60.71	Open
tRNA-Cys	contig_003095	2651	2732	+	61.59	Open
tRNA-Cys	contig_003097	35691	35772	+	60.77	Open
tRNA-Cys	contig_004679	32706	32789	+	59.39	Open
tRNA-Cys	contig_004918	11532	11612	+	60.52	Open
tRNA-Cys	contig_004951	44407	44489	-	58.02	Open
tRNA-Cys	contig_006618	8348	8433	-	59.21	Open
tRNA-Cys	contig_007541	32705	32785	-	60.16	Open

Codon: GCC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Gly	contig_000424	16015	16094	-	48.94	Open
tRNA-Gly	contig_000711	2200	2276	-	48.30	Open
tRNA-Gly	contig_000715	19349	19426	-	46.47	Open
tRNA-Gly	contig_000717	1835	1912	+	48.39	Open
tRNA-Gly	contig_000727	10171	10247	-	49.40	Open
tRNA-Gly	contig_000727	8662	8738	-	49.62	Open
tRNA-Gly	contig_000962	6043	6123	+	46.97	Open
tRNA-Gly	contig_001186	17198	17275	-	47.79	Open
tRNA-Gly	contig_001193	7300	7381	+	48.00	Open
tRNA-Gly	contig_001193	178	259	-	48.00	Open
tRNA-Gly	contig_001200	377	458	-	47.93	Open
tRNA-Gly	contig_002404	52619	52689	-	58.25	Open
tRNA-Gly	contig_002591	44177	44256	-	47.69	Open
tRNA-Gly	contig_002763	734	814	-	47.76	Open
tRNA-Gly	contig_003422	13092	13162	-	57.11	Open
tRNA-Gly	contig_003488	9726	9807	+	47.34	Open
tRNA-Gly	contig_003488	16616	16697	-	39.73	Open
tRNA-Gly	contig_003488	14613	14694	-	47.34	Open
tRNA-Gly	contig_003815	115274	115353	-	49.53	Open
tRNA-Gly	contig_006402	18844	18922	+	49.36	Open
tRNA-Gly	contig_007273	29123	29201	+	49.22	Open
tRNA-Gly	contig_007275	19530	19609	+	47.25	Open
tRNA-Gly	contig_007278	1075	1154	+	47.61	Open

Codon: GCG

No predictions for this codon

Codon: GCT

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Ser	contig_000475	4793	4880	+	54.97	Open
tRNA-Ser	contig_000509	30686	30774	+	44.81	Open
tRNA-Ser	contig_000755	6078	6165	-	55.19	Open
tRNA-Ser	contig_000765	5487	5574	+	52.89	Open
tRNA-Ser	contig_000773	28714	28801	-	54.08	Open
tRNA-Ser	contig_001317	1516	1604	+	52.30	Open
tRNA-Ser	contig_002716	21972	22064	-	51.72	Open
tRNA-Ser	contig_003404	24886	24978	+	53.69	Open
tRNA-Ser	contig_003405	228	318	+	54.05	Open
tRNA-Ser	contig_005093	28920	29011	-	53.34	Open

Codon: GGA

No predictions for this codon

Codon: GGC

No predictions for this codon

Codon: GGG

No predictions for this codon

Codon: GGT

No predictions for this codon

Codon: GTA

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Tyr	contig_000320	4288	4373	+	53.09	Open
tRNA-Tyr	contig_000344	6239	6324	+	52.58	Open
tRNA-Tyr	contig_000344	16134	16219	-	52.58	Open
tRNA-Tyr	contig_000347	7599	7685	-	50.64	Open
tRNA-Tyr	contig_000640	16991	17075	-	49.94	Open
tRNA-Tyr	contig_001506	6675	6760	-	51.66	Open
tRNA-Tyr	contig_001610	353	438	-	51.77	Open
tRNA-Tyr	contig_002235	7370	7455	-	50.69	Open
tRNA-Tyr	contig_003016	8782	8867	-	39.69	Open
tRNA-Tyr	contig_004595	4044	4129	-	50.47	Open
tRNA-Tyr	contig_004626	33685	33770	-	50.47	Open
tRNA-Tyr	contig_005973	588	673	+	50.27	Open
tRNA-Pseudo	contig_005991	23547	23619	+	22.51	Open
tRNA-Tyr	contig_006075	3142	3227	+	49.03	Open
tRNA-Tyr	contig_006436	43758	43844	-	35.33	Open
tRNA-Tyr	contig_007417	6589	6673	-	49.21	Open
tRNA-Tyr	contig_009870	231	317	-	50.64	Open

Codon: GTC

tRNA type	Location	Start	End	Strand	Score	Gbrowse
tRNA-Asp	contig_000510	41367	41445	+	43.49	Open
tRNA-Asp	contig_000555	15254	15332	-	40.96	Top Home Site Map About Contact © 2007-2013 The Blugen Consortium. Valid xhtml & css. Updated at 13:55 23/03/2011.